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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs10935120 1 rs6769885 chr3:134286913 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs9876781 1 rs6770470 chr3:48435123 TREX1 chr3:48501186-48509043:+ -0.28 -4.38 3.06E-5 Longevity
THYM cis rs2243480 1 rs67728539 chr7:65378124 CCT6P1 chr7:65216092-65228661:+ 0.64 4.57 1.46E-5 Diabetic kidney disease
THYM cis rs10935120 1 rs6772896 chr3:134203347 ANAPC13 chr3:134196547-134204865:- 0.58 7.97 3.55E-12 Height
THYM cis rs10935120 1 rs6772896 chr3:134203347 CEP63 chr3:134204575-134293852:+ 0.4 5.69 1.38E-7 Height
THYM cis rs9876781 1 rs6776700 chr3:48496758 TREX1 chr3:48501186-48509043:+ -0.28 -4.22 5.51E-5 Longevity
THYM cis rs583583 1 rs677977 chr1:147083744 ACP6 chr1:147119168-147142634:- -0.52 -5.61 1.97E-7 Schizophrenia (negative symptoms)
THYM cis rs9815354 1 rs6781326 chr3:41777028 ULK4 chr3:41288091-42003660:- 1.03 11.69 4.41E-20 Diastolic blood pressure
THYM cis rs10935120 1 rs6782563 chr3:134295959 ANAPC13 chr3:134196547-134204865:- -0.57 -7.59 2.17E-11 Height
THYM cis rs10935120 1 rs6782563 chr3:134295959 CEP63 chr3:134204575-134293852:+ -0.42 -6 3.53E-8 Height
THYM cis rs9815354 1 rs6783001 chr3:41862232 ULK4 chr3:41288091-42003660:- 1.02 11.47 1.22E-19 Diastolic blood pressure
THYM cis rs9876781 1 rs6784322 chr3:48422235 TREX1 chr3:48501186-48509043:+ -0.28 -4.2 6.07E-5 Longevity
THYM cis rs10935120 1 rs6785027 chr3:134211649 ANAPC13 chr3:134196547-134204865:- -0.57 -7.89 5.16E-12 Height
THYM cis rs10935120 1 rs6785027 chr3:134211649 CEP63 chr3:134204575-134293852:+ -0.42 -6.17 1.7E-8 Height
THYM cis rs10935120 1 rs6787371 chr3:134254991 ANAPC13 chr3:134196547-134204865:- 0.58 7.96 3.67E-12 Height